cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3907,628
Bacillus anthracis cgMLST3,803222
Bordetella pertussis cgMLST2,983167
Brucella melitensis cgMLST2,704156
Brucella spp. cgMLST1,764635
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,22178
Campylobacter jejuni/coli cgMLST6377,784
Clostridioides difficile cgMLST2,1475,435
Clostridium perfringens cgMLST1,4314
Corynebacterium diphtheriae cgMLST1,553343
Corynebacterium pseudotuberculosis cgMLST1,57796
Cronobacter sakazakii/malonaticus cgMLST2,83139
Enterococcus faecalis cgMLST1,9723,598
Enterococcus faecium cgMLST1,4238,763
Escherichia coli cgMLST2,51352,841
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536219
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35814,225
Legionella pneumophila cgMLST1,5211,215
Listeria monocytogenes cgMLST1,70121,516
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89129,770
Mycobacteroides abscessus cgMLST2,904691
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Pseudomonas aeruginosa cgMLST3,8675,248
Salmonella enterica cgMLST3,00224,916
Serratia marcescens cgMLST2,6921,523
Staphylococcus aureus cgMLST1,86139,569
Staphylococcus capitis cgMLST1,492390
Streptococcus pyogenes cgMLST1,095860
Yersinia enterocolitica cgMLST2,582585
 
 
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