cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,098
Bacillus anthracis cgMLST3,803223
Bordetella pertussis cgMLST2,983192
Brucella melitensis cgMLST2,704157
Brucella spp. cgMLST1,764660
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221135
Campylobacter jejuni/coli cgMLST6379,453
Clostridioides difficile cgMLST2,1476,923
Clostridium perfringens cgMLST1,43181
Corynebacterium diphtheriae cgMLST1,553364
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831186
Enterobacter hormaechei cgMLST2,17893
Enterococcus faecalis cgMLST1,9724,113
Enterococcus faecium cgMLST1,4239,500
Escherichia coli cgMLST2,51364,501
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536599
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35817,772
Legionella pneumophila cgMLST1,5211,534
Listeria monocytogenes cgMLST1,70123,110
Morganella morganii cgMLST2,4623
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89139,317
Mycobacteroides abscessus cgMLST2,904890
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,57414
Providencia stuartii cgMLST3,0794
Pseudomonas aeruginosa cgMLST3,8676,929
Salmonella enterica cgMLST3,00229,346
Serratia marcescens cgMLST2,6921,753
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86146,705
Staphylococcus capitis cgMLST1,492422
Streptococcus pyogenes cgMLST1,0951,130
Yersinia enterocolitica cgMLST2,582756
 
 
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