cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the Ridom Typer software (formerly known as SeqSphere). A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,598
Bacillus anthracis cgMLST3,803225
Bordetella pertussis cgMLST2,983447
Brucella melitensis cgMLST2,704172
Brucella spp. cgMLST1,764661
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221522
Campylobacter jejuni/coli cgMLST63710,453
Citrobacter freundii cgMLST3,250591
Citrobacter freundii/portucalensis/braakii/europaeus cgMLST2,307224
Clostridioides difficile cgMLST2,1479,442
Clostridium perfringens cgMLST1,43184
Corynebacterium diphtheriae cgMLST1,553395
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831217
Enterobacter hormaechei cgMLST2,178528
Enterococcus faecalis cgMLST1,9724,743
Enterococcus faecium cgMLST1,42310,273
Escherichia coli cgMLST2,51373,210
Francisella tularensis cgMLST1,147265
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536888
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35821,787
Legionella pneumophila cgMLST1,5211,841
Listeria monocytogenes cgMLST1,70124,414
Morganella morganii cgMLST2,46232
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89142,871
Mycobacteroides abscessus cgMLST2,904975
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,574107
Providencia stuartii cgMLST3,07916
Pseudomonas aeruginosa cgMLST3,8678,627
Salmonella enterica cgMLST3,00232,218
Serratia marcescens cgMLST2,6922,089
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86154,638
Staphylococcus capitis cgMLST1,492479
Streptococcus pyogenes cgMLST1,0951,424
Yersinia enterocolitica cgMLST2,5821,006
 
 
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