cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,016
Bacillus anthracis cgMLST3,803223
Bordetella pertussis cgMLST2,983189
Brucella melitensis cgMLST2,704157
Brucella spp. cgMLST1,764635
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221130
Campylobacter jejuni/coli cgMLST6378,820
Clostridioides difficile cgMLST2,1476,510
Clostridium perfringens cgMLST1,43178
Corynebacterium diphtheriae cgMLST1,553361
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831173
Enterococcus faecalis cgMLST1,9723,959
Enterococcus faecium cgMLST1,4239,356
Escherichia coli cgMLST2,51362,625
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536406
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35816,500
Legionella pneumophila cgMLST1,5211,406
Listeria monocytogenes cgMLST1,70122,660
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89135,576
Mycobacteroides abscessus cgMLST2,904888
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Pseudomonas aeruginosa cgMLST3,8676,586
Salmonella enterica cgMLST3,00228,413
Serratia marcescens cgMLST2,6921,644
Staphylococcus aureus cgMLST1,86142,796
Staphylococcus capitis cgMLST1,492418
Streptococcus pyogenes cgMLST1,095964
Yersinia enterocolitica cgMLST2,582725
 
 
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