cgMLST.org Nomenclature Server
This server controls the allelic nomenclature of core genome MLST
(cgMLST) bacterial gene schemes.
Currently submission of new alleles and optional metadata is only possible by use of the
SeqSphere+ software.
A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related
species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping.
By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT).
In addition, this server controls the allelic nomenclature of the accessory genes of the
species seed genomes.
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Scheme | Target Count | Strain Count |
---|
Acinetobacter baumannii cgMLST | 2,390 | 8,341 |
Bacillus anthracis cgMLST | 3,803 | 209 |
Bordetella pertussis cgMLST | 2,983 | 0 |
Brucella melitensis cgMLST | 2,704 | 89 |
Brucella spp. cgMLST | 1,764 | 1 |
Burkholderia mallei (FLI) cgMLST | 2,838 | 1 |
Burkholderia mallei (RKI) cgMLST | 3,328 | 13 |
Burkholderia pseudomallei cgMLST | 4,221 | 66 |
Campylobacter jejuni/coli cgMLST | 637 | 4,842 |
Clostridioides difficile cgMLST | 2,147 | 1,885 |
Clostridium perfringens cgMLST | 1,431 | 99 |
Cronobacter sakazakii/malonaticus cgMLST | 2,831 | 0 |
Enterococcus faecalis cgMLST | 1,972 | 3,777 |
Enterococcus faecium cgMLST | 1,423 | 18,007 |
Escherichia coli cgMLST | 2,513 | 16,289 |
Francisella tularensis cgMLST | 1,147 | 240 |
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST | 2,358 | 11,012 |
Legionella pneumophila cgMLST | 1,521 | 1,272 |
Listeria monocytogenes cgMLST | 1,701 | 29,204 |
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST | 2,891 | 37,162 |
Mycobacteroides abscessus cgMLST | 2,904 | 2,248 |
Mycoplasma gallisepticum cgMLST | 425 | 80 |
Paenibacillus larvae cgMLST | 2,419 | 176 |
Pseudomonas aeruginosa cgMLST | 3,867 | 6,210 |
STEC cgMLST | 3,152 | 8,474 |
Salmonella enterica cgMLST | 3,002 | 9,991 |
Serratia marcescens cgMLST | 2,692 | 1,105 |
Staphylococcus aureus cgMLST | 1,861 | 36,051 |
Staphylococcus capitis cgMLST | 1,492 | 626 |