cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,051
Bacillus anthracis cgMLST3,803223
Bordetella pertussis cgMLST2,983189
Brucella melitensis cgMLST2,704157
Brucella spp. cgMLST1,764635
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221135
Campylobacter jejuni/coli cgMLST6378,957
Clostridioides difficile cgMLST2,1476,621
Clostridium perfringens cgMLST1,43180
Corynebacterium diphtheriae cgMLST1,553363
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831179
Enterobacter hormaechei cgMLST2,1787
Enterococcus faecalis cgMLST1,9724,081
Enterococcus faecium cgMLST1,4239,405
Escherichia coli cgMLST2,51363,215
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536516
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35816,889
Legionella pneumophila cgMLST1,5211,438
Listeria monocytogenes cgMLST1,70122,807
Morganella morganii cgMLST2,4621
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89136,603
Mycobacteroides abscessus cgMLST2,904888
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,5746
Pseudomonas aeruginosa cgMLST3,8676,723
Salmonella enterica cgMLST3,00228,697
Serratia marcescens cgMLST2,6921,694
Staphylococcus aureus cgMLST1,86143,193
Staphylococcus capitis cgMLST1,492421
Streptococcus pyogenes cgMLST1,095980
Yersinia enterocolitica cgMLST2,582730
 
 
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