Nomenclature Server

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountStrain Count
Acinetobacter baumannii cgMLST2,3908,023
Bacillus anthracis cgMLST3,8031
Brucella melitensis cgMLST2,70489
Burkholderia pseudomallei cgMLST4,2211
Campylobacter jejuni/coli cgMLST6374,511
Clostridioides difficile cgMLST2,1471,148
Clostridium perfringens cgMLST1,43198
Enterococcus faecalis cgMLST1,9723,664
Enterococcus faecium cgMLST1,42316,789
Escherichia coli cgMLST2,51311,865
Francisella tularensis cgMLST1,147240
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,3589,913
Legionella pneumophila cgMLST1,5211,183
Listeria monocytogenes cgMLST1,70127,886
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89136,363
Mycoplasma gallisepticum cgMLST42580
Paenibacillus larvae cgMLST2,419176
Pseudomonas aeruginosa cgMLST3,8675,264
STEC cgMLST3,1525,911
Salmonella enterica cgMLST3,0027,669
Staphylococcus aureus cgMLST1,86131,666
Implemented and maintained by Ridom GmbH, Germany
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