cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the Ridom Typer software (formerly known as SeqSphere). A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,321
Bacillus anthracis cgMLST3,803225
Bordetella pertussis cgMLST2,983202
Brucella melitensis cgMLST2,704171
Brucella spp. cgMLST1,764660
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221507
Campylobacter jejuni/coli cgMLST6379,975
Clostridioides difficile cgMLST2,1477,626
Clostridium perfringens cgMLST1,43181
Corynebacterium diphtheriae cgMLST1,553379
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831197
Enterobacter hormaechei cgMLST2,178263
Enterococcus faecalis cgMLST1,9724,527
Enterococcus faecium cgMLST1,4239,827
Escherichia coli cgMLST2,51367,494
Francisella tularensis cgMLST1,147236
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536746
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35819,777
Legionella pneumophila cgMLST1,5211,676
Listeria monocytogenes cgMLST1,70123,638
Morganella morganii cgMLST2,46214
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89140,757
Mycobacteroides abscessus cgMLST2,904974
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,57442
Providencia stuartii cgMLST3,0799
Pseudomonas aeruginosa cgMLST3,8678,087
Salmonella enterica cgMLST3,00230,495
Serratia marcescens cgMLST2,6921,952
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86148,911
Staphylococcus capitis cgMLST1,492454
Streptococcus pyogenes cgMLST1,0951,340
Yersinia enterocolitica cgMLST2,582793
 
 
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