cgMLST.org Nomenclature Server

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountStrain Count
Acinetobacter baumannii cgMLST2,3905,370
Brucella melitensis cgMLST2,70488
Clostridioides difficile cgMLST2,2705,058
Enterococcus faecalis cgMLST1,9721,607
Enterococcus faecium cgMLST1,42311,172
Escherichia coli cgMLST3,1521,819
Francisella tularensis cgMLST1,147240
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,3588,139
Legionella pneumophila cgMLST1,521908
Listeria monocytogenes cgMLST1,70121,037
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89136,750
Mycoplasma gallisepticum cgMLST42578
Staphylococcus aureus cgMLST1,86126,032
 
 
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