cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3907,893
Bacillus anthracis cgMLST3,803223
Bordetella pertussis cgMLST2,983180
Brucella melitensis cgMLST2,704156
Brucella spp. cgMLST1,764635
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,22178
Campylobacter jejuni/coli cgMLST6378,360
Clostridioides difficile cgMLST2,1476,167
Clostridium perfringens cgMLST1,43177
Corynebacterium diphtheriae cgMLST1,553358
Corynebacterium pseudotuberculosis cgMLST1,57798
Cronobacter sakazakii/malonaticus cgMLST2,831132
Enterococcus faecalis cgMLST1,9723,884
Enterococcus faecium cgMLST1,4239,140
Escherichia coli cgMLST2,51359,352
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536347
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35815,493
Legionella pneumophila cgMLST1,5211,309
Listeria monocytogenes cgMLST1,70122,284
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89132,505
Mycobacteroides abscessus cgMLST2,904888
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Pseudomonas aeruginosa cgMLST3,8675,898
Salmonella enterica cgMLST3,00227,384
Serratia marcescens cgMLST2,6921,597
Staphylococcus aureus cgMLST1,86141,741
Staphylococcus capitis cgMLST1,492392
Streptococcus pyogenes cgMLST1,095895
Yersinia enterocolitica cgMLST2,582618
 
 
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