cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the Ridom Typer software (formerly known as SeqSphere). A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,369
Bacillus anthracis cgMLST3,803225
Bordetella pertussis cgMLST2,983202
Brucella melitensis cgMLST2,704171
Brucella spp. cgMLST1,764660
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221507
Campylobacter jejuni/coli cgMLST6379,998
Citrobacter freundii cgMLST3,25021
Citrobacter freundii/portucalensis/braakii/europaeus cgMLST2,30730
Clostridioides difficile cgMLST2,1477,687
Clostridium perfringens cgMLST1,43181
Corynebacterium diphtheriae cgMLST1,553388
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831199
Enterobacter hormaechei cgMLST2,178267
Enterococcus faecalis cgMLST1,9724,564
Enterococcus faecium cgMLST1,4239,869
Escherichia coli cgMLST2,51368,226
Francisella tularensis cgMLST1,147237
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536774
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35820,159
Legionella pneumophila cgMLST1,5211,709
Listeria monocytogenes cgMLST1,70123,735
Morganella morganii cgMLST2,46214
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89141,248
Mycobacteroides abscessus cgMLST2,904975
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,57444
Providencia stuartii cgMLST3,0799
Pseudomonas aeruginosa cgMLST3,8678,197
Salmonella enterica cgMLST3,00230,710
Serratia marcescens cgMLST2,6921,997
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86149,328
Staphylococcus capitis cgMLST1,492454
Streptococcus pyogenes cgMLST1,0951,364
Yersinia enterocolitica cgMLST2,582801
 
 
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