cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3907,645
Bacillus anthracis cgMLST3,803223
Bordetella pertussis cgMLST2,983171
Brucella melitensis cgMLST2,704156
Brucella spp. cgMLST1,764635
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,22178
Campylobacter jejuni/coli cgMLST6377,951
Clostridioides difficile cgMLST2,1475,679
Clostridium perfringens cgMLST1,43112
Corynebacterium diphtheriae cgMLST1,553346
Corynebacterium pseudotuberculosis cgMLST1,57796
Cronobacter sakazakii/malonaticus cgMLST2,83141
Enterococcus faecalis cgMLST1,9723,628
Enterococcus faecium cgMLST1,4238,813
Escherichia coli cgMLST2,51354,392
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536262
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35814,318
Legionella pneumophila cgMLST1,5211,235
Listeria monocytogenes cgMLST1,70121,709
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89130,525
Mycobacteroides abscessus cgMLST2,904692
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Pseudomonas aeruginosa cgMLST3,8675,466
Salmonella enterica cgMLST3,00225,147
Serratia marcescens cgMLST2,6921,530
Staphylococcus aureus cgMLST1,86139,985
Staphylococcus capitis cgMLST1,492392
Streptococcus pyogenes cgMLST1,095865
Yersinia enterocolitica cgMLST2,582596
 
 
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