cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,015
Bacillus anthracis cgMLST3,803223
Bordetella pertussis cgMLST2,983189
Brucella melitensis cgMLST2,704157
Brucella spp. cgMLST1,764635
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,22182
Campylobacter jejuni/coli cgMLST6378,758
Clostridioides difficile cgMLST2,1476,492
Clostridium perfringens cgMLST1,43178
Corynebacterium diphtheriae cgMLST1,553361
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831172
Enterococcus faecalis cgMLST1,9723,951
Enterococcus faecium cgMLST1,4239,309
Escherichia coli cgMLST2,51362,450
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536403
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35816,448
Legionella pneumophila cgMLST1,5211,404
Listeria monocytogenes cgMLST1,70122,601
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89135,524
Mycobacteroides abscessus cgMLST2,904888
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Pseudomonas aeruginosa cgMLST3,8676,576
Salmonella enterica cgMLST3,00228,395
Serratia marcescens cgMLST2,6921,638
Staphylococcus aureus cgMLST1,86142,655
Staphylococcus capitis cgMLST1,492418
Streptococcus pyogenes cgMLST1,095956
Yersinia enterocolitica cgMLST2,582725
 
 
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