cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the Ridom Typer software (formerly known as SeqSphere). A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,379
Bacillus anthracis cgMLST3,803225
Bordetella pertussis cgMLST2,983202
Brucella melitensis cgMLST2,704171
Brucella spp. cgMLST1,764660
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221508
Campylobacter jejuni/coli cgMLST63710,002
Citrobacter freundii cgMLST3,250329
Citrobacter freundii/portucalensis/braakii/europaeus cgMLST2,30731
Clostridioides difficile cgMLST2,1477,911
Clostridium perfringens cgMLST1,43181
Corynebacterium diphtheriae cgMLST1,553389
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831199
Enterobacter hormaechei cgMLST2,178270
Enterococcus faecalis cgMLST1,9724,568
Enterococcus faecium cgMLST1,4239,878
Escherichia coli cgMLST2,51368,420
Francisella tularensis cgMLST1,147238
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536775
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35820,203
Legionella pneumophila cgMLST1,5211,712
Listeria monocytogenes cgMLST1,70123,785
Morganella morganii cgMLST2,46214
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89141,313
Mycobacteroides abscessus cgMLST2,904975
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,57444
Providencia stuartii cgMLST3,0799
Pseudomonas aeruginosa cgMLST3,8678,221
Salmonella enterica cgMLST3,00230,869
Serratia marcescens cgMLST2,6921,998
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86149,508
Staphylococcus capitis cgMLST1,492462
Streptococcus pyogenes cgMLST1,0951,365
Yersinia enterocolitica cgMLST2,582803
 
 
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