cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the Ridom Typer software (formerly known as SeqSphere). A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,121
Bacillus anthracis cgMLST3,803223
Bordetella pertussis cgMLST2,983192
Brucella melitensis cgMLST2,704169
Brucella spp. cgMLST1,764660
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221135
Campylobacter jejuni/coli cgMLST6379,662
Clostridioides difficile cgMLST2,1477,033
Clostridium perfringens cgMLST1,43181
Corynebacterium diphtheriae cgMLST1,553372
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831188
Enterobacter hormaechei cgMLST2,178103
Enterococcus faecalis cgMLST1,9724,341
Enterococcus faecium cgMLST1,4239,570
Escherichia coli cgMLST2,51365,016
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536622
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35818,560
Legionella pneumophila cgMLST1,5211,565
Listeria monocytogenes cgMLST1,70123,234
Morganella morganii cgMLST2,4625
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89139,572
Mycobacteroides abscessus cgMLST2,904890
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,57416
Providencia stuartii cgMLST3,0797
Pseudomonas aeruginosa cgMLST3,8677,166
Salmonella enterica cgMLST3,00229,599
Serratia marcescens cgMLST2,6921,876
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86147,346
Staphylococcus capitis cgMLST1,492422
Streptococcus pyogenes cgMLST1,0951,150
Yersinia enterocolitica cgMLST2,582764
 
 
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