cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

We care about your privacy. Read our privacy policy.

SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,042
Bacillus anthracis cgMLST3,803223
Bordetella pertussis cgMLST2,983189
Brucella melitensis cgMLST2,704157
Brucella spp. cgMLST1,764635
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221135
Campylobacter jejuni/coli cgMLST6378,878
Clostridioides difficile cgMLST2,1476,617
Clostridium perfringens cgMLST1,43180
Corynebacterium diphtheriae cgMLST1,553363
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831178
Enterobacter hormaechei cgMLST2,1787
Enterococcus faecalis cgMLST1,9724,073
Enterococcus faecium cgMLST1,4239,394
Escherichia coli cgMLST2,51363,038
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536516
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35816,849
Legionella pneumophila cgMLST1,5211,433
Listeria monocytogenes cgMLST1,70122,785
Morganella morganii cgMLST2,4621
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89136,104
Mycobacteroides abscessus cgMLST2,904888
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,5746
Pseudomonas aeruginosa cgMLST3,8676,719
Salmonella enterica cgMLST3,00228,634
Serratia marcescens cgMLST2,6921,693
Staphylococcus aureus cgMLST1,86143,077
Staphylococcus capitis cgMLST1,492420
Streptococcus pyogenes cgMLST1,095978
Yersinia enterocolitica cgMLST2,582730
 
 
Implemented and maintained by Ridom GmbH, Germany
Privacy Policy       Server Policy       Imprint