cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,067
Bacillus anthracis cgMLST3,803223
Bordetella pertussis cgMLST2,983189
Brucella melitensis cgMLST2,704157
Brucella spp. cgMLST1,764660
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221135
Campylobacter jejuni/coli cgMLST6379,160
Clostridioides difficile cgMLST2,1476,840
Clostridium perfringens cgMLST1,43181
Corynebacterium diphtheriae cgMLST1,553364
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831181
Enterobacter hormaechei cgMLST2,1789
Enterococcus faecalis cgMLST1,9724,097
Enterococcus faecium cgMLST1,4239,448
Escherichia coli cgMLST2,51363,808
Francisella tularensis cgMLST1,147226
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536556
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35817,106
Legionella pneumophila cgMLST1,5211,477
Listeria monocytogenes cgMLST1,70122,961
Morganella morganii cgMLST2,4621
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89137,707
Mycobacteroides abscessus cgMLST2,904890
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,5747
Providencia stuartii cgMLST3,0791
Pseudomonas aeruginosa cgMLST3,8676,832
Salmonella enterica cgMLST3,00228,948
Serratia marcescens cgMLST2,6921,707
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86143,670
Staphylococcus capitis cgMLST1,492421
Streptococcus pyogenes cgMLST1,0951,117
Yersinia enterocolitica cgMLST2,582745
 
 
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